SE2020080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5282
  • Medicago truncatula
  • SE2020080
  • Mutator
  • M34
  • MtChr4:7429861-7430141
  • TTTTTTATT
  • CTTAATACATCATTTAGTCCCTAACTTATTTTTGGTTTTTACTTTGGTCCCCTAACTATAAAGTGTCTTAATTTGGTCTCGTAAATCTTACGTCGTTTACTATTTTGGTCCCATTAAAATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTATTGA                   - C                           CCC               C                      AC        C           CA  --AA      AGACA
           CTTAATACATCATTTAGTC C TAACTTATTTTTGGTTTTTACTTTGGT   CTAACTATAAAGTGT TTAATTTGGTCTCGTAAATCTT  GTCGTTTA TATTTTGGTCC  TT    AATATT     
           ||||||||||||||||||| | |||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||||||  ||    ||||||     T
           GAATTATGTAGTAAATCAG G ATTGAATAAAAACCAAAAGTGAAACTA   GATTGATATTTCACA AGTTAAACCAGAGTATTTAGAA  CAGCAAAT ATAAAGCCAGG  AG    TTATAA     
TTATTTTTTCC                   A A                           -AA               T                      GT        A           AG  CCAA      AATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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