Plant MITE

SE2020087

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5289
Medicago truncatula
SE2020087
Mutator
M9
MtChr5:22392321-22392653
TAAAATTAA
GCTTAATAGTAGTTTTAGCCTCCTAACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATTAAAA                A C            TTAAA            -   AC    A       C           -  C          CT  A  GC            ---     CCAATTTTGACTCGGTCTACGCTGACGTGGCACCCCA
           GCTTAATAGTAGTTTT G CTCCTAACTTTT     GTTGCGATTTTG TCC  TAAG AAAAAAA TACAAAACCGT CT TAAGTTTTGC  CT TG  AGTTTTGGTTCC   CAAAA                                     
           |||||||||||||||| | ||||||||||||     |||||||||||| |||  |||| ||||||| ||||||||||| || ||||||||||  || ||  ||||||||||||   |||||                                     A
           CGAATTATCGTCAAAA C GGGGATTGAAAA     CAACGCTAAAAC GGG  ATTC TTTTTTT ATGTTTTGGCA GG ATTCAAAATG  GA AT  TCAAAACCGAGG   TACGA                                     
 AATTAAAATC                G A            TACGA            C   GA    A       A           A  T          TT  C  AA            AAT     TTAAAAACCATTTTTTTTTATTGTGCACTGTTGAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020087

TAAAATTAAAAGCTTAATAGTAGTTTTAGCCTCCTAACTTTTTTAAAGTTGCGATTTTGTCCACTAAGAAAAAAAACTACAAAACCGTCTCTAAGTTTTGCCTCTATGGCAGTTTTGGTTCCCAAAACCAATTTTGACTCGGTCTACGCTGACGTGGCACCCCAAGTGAGTTGTCACGTGTTATTTTTTTTTACCAAAAATTAGCATTAAGGAGCCAAAACTAATACAGTTGTAAAACTTATGGAACGGTTTTGTAATTTTTTTACTTAAGGGGCCAAAATCGCAACAGCATAAAAGTTAGGGGACGAAAACTGCTATTAAGCCTAAAATTAA

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