SE2040088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5290
  • Medicago truncatula
  • SE2040088
  • CACTA
  • Ca1
  • MtChr4:3908018-3908169
  • CAT
  • CACTACTAGAAAAAGCAAAATTAGCGAGGGAAATTAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAT             AGC        C        TTA   ACGGAAAAAA           ACA      TTG    AAAAA
   CACTACTAGAAAA   AAAATTAG GAGGGAAA   GTG          TGAAATTCCTC   AATTTC   GTCG     
   |||||||||||||   |||||||| ||||||||   |||          |||||||||||   ||||||   ||||      
   GTGATGATTTTTT   TTTTAATC CTCCCTTT   TAC          ATTTTAGGGAG   TTAAGG   CAGT     
TAC             GGT        A        ---   ----------           ATA      ---    GATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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