Plant MITE

SE2020089

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5291
Medicago truncatula
SE2020089
Mutator
M37
MtChr2:26554137-26554339
TTAATATAA
TAAGGGAAATGCTATCAAGTGTCCTTGGGGACTTGTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

TTAATA      --        T     G         -       T  AAG     AT  ---  AACTTTTTCTTGGAAATTGTGTATTTAACACATTGAAACT
      TAAGGG  AAATGCTA CAAGT TCCTTGGGG ACTTGTT AG   TCCAA  AA   GA                                        
      ||||||  |||||||| ||||| ||||||||| ||||||| ||   |||||  ||   ||                                         
      ATTCCC  TTTACGAT GTTCA GGGAATCCC TGAATAA TC   AAGTT  TT   CT                                        
AATATA      AT        T     A         G       T  -CT     --  CTC  TTATTAAATATTTAAAATACATATTTTTCAAAGAAAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020089

TTAATATAAGGGAAATGCTATCAAGTGTCCTTGGGGACTTGTTTAGAAGTCCAAATAAGAAACTTTTTCTTGGAAATTGTGTATTTAACACATTGAAACTTCAAAAAGAAACTTTTTATACATAAAATTTATAAATTATTTCCTCTTTTGAATCCTTAATAAGTGCCCTAAGGGAACTTGTTAGCATTTTACCCTTAATATAA

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