SE2020090

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5292
  • Medicago truncatula
  • SE2020090
  • Mutator
  • M38
  • MtChr4:12463322-12463721
  • AAAATAAAA
  • GGGGTAATAGTCATTTTGGTTCCTGAATGTGTAGCAAGTAGTCACAATAGTCCTTCAATGTATCAAAATTTCAAAAAAGTCTCTGATAGTCCACTTTGTTAGTCAAAATAGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATAAAAA    TAA                      T                                              A          A  C                       CTAACGCTT     A   C      --C   CAATAAC            GAA   AAAATGACAATAAATA   A GTA
          GGGG   TAGTCATTTTGGTTCCTGAATG GTAGCAAGTAGTCACAATAGTCCTTCAATGTATCAAAATTTCAAAA AGTCTCTGAT GT CACTTTGTTAGTCAAAATAGTCT         AAATA TTC TTAATA   TCA       TCTTTTGATATA   ACT                AGT C   
          ||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||         ||||| ||| ||||||   |||       ||||||||||||   |||                ||| |    
          CCCC   ATCAGTGAAACCAGGGACTTAC CATTGTTCATCAGTGTTATCAGGGAGTTACATAGTTTTAAGGTTTT TCAGGGACTA CA GTGAAACAATTAGTTTTATCAGG         TTTAT AAG AATTAT   AGT       AGGAAGTTATAT   TGA                TCA G   
 AAAAATAAA    TTC                      T                                              A          A  C                       AACTATAAT     A   C      AAC   -ATAATC            GAA   ----ATAATAGTACAA   G AAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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