Plant MITE

SE2020103

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5305
Medicago truncatula
SE2020103
Mutator
M25
MtChr7:7733168-7733346
AAAAATGAG
GAGGAATGCTAGCAACACA

Secondary structure and sequence

TSD TIR

5'

3'

 AAAAAT                   CACT   C              C   A         CAC     TCCCACCAAATCACGTGGGTC
       GAGGAATGCTAGCAACACA    TTC AACACACTCTCTTT ATT GTTAAAATT   ATGGG                     
       |||||||||||||||||||    ||| |||||||||||||| ||| |||||||||   |||||                      
       CTCTTTATGATCGTTGTGT    AAG TTGTGTGAGAGAAA TAA CAATTTTGA   TACTC                     
TAAACTT                   --AT   A              T   C         ATA     TCTGGGTAGTTTAAATATACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020103

AAAAATGAGGAATGCTAGCAACACACACTTTCCAACACACTCTCTTTCATTAGTTAAAATTCACATGGGTCCCACCAAATCACGTGGGTCTCATATAAATTTGATGGGTCTCTCATATAAGTTTTAACCAATTAAAGAGAGTGTGTTAGAATATGTGTTGCTAGTATTTCTCTTCAAAT

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