SE2030104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5306
  • Medicago truncatula
  • SE2030104
  • hAT
  • Hat13
  • MtChr5:39040108-39040608
  • ATCATTAT
  • ATCAGGGCCGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCATT                     A ------      TCGGCTCTCAAATAAAAATAGGCCCCTAGTCAAAATAAAAATACAATTTTTTTAAAAGAGCAAAAAAAATTATAATGTTTTTTATTTTATATTTTTAAAAAATAATTATAATGTTTGTTGTTAGAGCTTATTGTAATAAGAGGAGATAGTATTTAGGATATATAAACCTCAAACCCATCAAAATTAGGCAAAAAAAGACCCTATAATGCTGGA
      ATCAGGGCCGTCCCAATAAAA T      GGAGGC                                                                                                                                                                                                                     
      ||||||||||||||||||||| |      ||||||                                                                                                                                                                                                                      
      TAGTCCCGGTAGGGACCCCTC C      GTCGAG                                                                                                                                                                                                                     
TATTAC                     - ACGTTT      ATGACTCGACCCGGAGGGGTTTAAAACCCCGGGTTAAAAAAAATATATATATATATATTACGTGACTTTAATATTATATATATGTCTATTGTAACATTAGAATTGTTTTAACTTCCGCGCGGGGTCACTATTTAAAACCTCTATAACTTGAATACATGAGGCTAAGTTAAGGACACCCACAACTAAAAACACAAAAATAGTAAATAAATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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