SE2030106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5308
  • Medicago truncatula
  • SE2030106
  • hAT
  • Hat1
  • AC146630:65114-65701
  • GGGAGTAG
  • TAGGCATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GGGAGTAG             AAA      GTCCATGGGTACCCCCGCCCAAACCAACCTCGATTTGACGGTTTTTTCCCAATTTGATTGGGTTTGGGTATGAGTTTGGGTTTTCCCCGATTTCAAAATACGGGTACGGGACGGGTAATGGGGATATATGTACCCATACCCAAACCCTACCCGAATGTAGAAAGGTCGTATTTTTGTTTTTGTTAAGGGGGTTGATAATGATATGCCATGTTATTTGGTTTGATAATTGTCATGATATAAGAACTTTCACGGATAGTTATAGGAG
        TAGGCATGGCAAT   ACCCAT                                                                                                                                                                                                                                                                         
        |||||||||||||   ||||||                                                                                                                                                                                                                                                                         C
        ATCCGTACTGTTA   CCCCGC                                                                                                                                                                                                                                                                         
GATGAGGG             ---      CCCACCCCTGCCCAAAACGGAAGGGGTAGGGGTAGGGGATGAAGGTATATGAATGGGCAATGGGATGGGTATGGGTTTCCCCTACTCTTTAACTTAGGGTAGGGGCAGGGCTTACCCAAGCCCATAAGGGTGGTGTAGGGGCAAGGGTGTCACTTTGTTAAAAAAATTATTTTTTTCTCAAAAAAATTCGAAGTTACCATTACAACATTACGTAATAGGTTATTAAACGCGAGTAAAATTGTAAAACAATGGCTTATTAAGCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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