SE2020107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5309
  • Medicago truncatula
  • SE2020107
  • Mutator
  • M39
  • MtChr5:18419854-18420182
  • TTTTAATTA
  • TTAATTAGGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCTTGTAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT    TT                                  C                               -AAAAAAA      C         --             A            -CC   TTTTGTGATAATTTGCATACGTGTCACATTATAA
   TTAA  AGGCTAAAATATGGTTTTAGTCCCTGCAAATATG CTCGTTTTGGTTTTAGTCCTTGTAAAAAAAA        TTTGGT CCTGCAAAA  TTTTGTTTTTGAA ATAGTCTCTGAC   CAC                                  
   ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||| |||||||||  ||||||||||||| ||||||||||||   |||                                  C
   AATT  TCCGATTTTATACCAAAATCAGGGACGTTTATAC GAGCAAAACTAAAATCAGGGACATTTTTTTT        AAACCA GGATGTTTT  AAAACAAAAACTT TATCAGGGATTG   TAT                                  
ATT    -T                                  A                               CAAAACAA      A         TA             A            TTT   AAAACGTCCCTGGTTCTTGATATTTTAACCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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