SE2020110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5312
  • Medicago truncatula
  • SE2020110
  • Mutator
  • M46
  • MtChr4:37681429-37681609
  • AAGGGTTTG
  • GGGTTTGTCT

Secondary structure and sequence

TSD    TIR
5'



3'
AA      G   AACAT      TA               TAAC    AG  T       -T A     AACCAACAATTATTG         T
  GGGTTT TCT     GTGCAA  TTGCATATGTTAAGG    TAAA  TA TAACTTT  C TTGAA               ATTAAATGT 
  |||||| |||     ||||||  |||||||||||||||    ||||  || |||||||  | |||||               ||||||||| A
  CCCAAA AGA     TACGTT  AACGTGTACAATTCT    ATTT  AT ATTGAAA  G AACTT               TAATTTATA 
TA      A   -----      TA               GCAA    -A  C       CT A     -AAACACAAAAAATA         C

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End