SE2020112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5314
  • Medicago truncatula
  • SE2020112
  • Mutator
  • M48
  • MtChr3:37161499-37161789
  • GAGTTCGGG
  • GAGTTCGGGTATGCTCCATTTAAGCTAAACTCCATTTAAGGTTTGGATGTAAGACATGTGGCAAAAAAATATCTAATGGTTGAAATTTTAAATTAAAAAATAAATATTTGTTTAATAAAATTACATAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
               C     AA     ---------          A                             A          T   A               --     TAT     ---------  AT    --TT       AATAAC
GAGTTCGGGTATGCT CATTT  GCTAA         ACTCCATTTA GGTTTGGATGTAAGACATGTGGCAAAAAA TATCTAATGG TGA ATTTTAAATTAAAAA  ATAAA   TTGTT         TA  AAAA    ACATAAT      
||||||||||||||| |||||  |||||         |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||  |||||   |||||         ||  ||||    |||||||       
TTCAAGTCCATACGA GTAAA  CGATT         TGAGGTAAAT CCGAACCTACGTTCTGTACACCGTTTTTT ATAGATTGCC ACT TAAAATTTAATTTTT  TATTT   AACAA         AT  TTTT    TGTATTA      
               A     AA     CACGATAAA          C                             -          T   C               GT     TCC     CGCTATACT  CT    CTCT       AACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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