Plant MITE

SE2010115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5317
Medicago truncatula
SE2010115
Tc1/Mariner
St11
MtChr1:22814121-22814382
TA
TACTCCCTCCGTCCCTTAATAAATGACCTAGTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

        C       T                   AGTATGCA     GAC   ATATATTTTGACCATACTTTTCTACTAATTCACAAAGATAAATAATATCATGTAAGATGTTGTTGGATTCGTCTCGAT
TACTCCCT CGTCCCT AATAAATGACCTAGTTGAC        TTATT   TTG                                                                              
|||||||| ||||||| |||||||||||||||||||        |||||   |||                                                                              G
ATGAGGGA GCAGGGA TTATTTACTGGATCAACTG        TGTGT   ATG                                                                              
        T       T                   --AGACTG     ---   GTTACGTATACAAAATAGAAACTATAGAAGTTAAGAGATGATTTTTTTTAATATTTTTAAATTATAAAATTTTTATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010115

TACTCCCTCCGTCCCTTAATAAATGACCTAGTTGACAGTATGCATTATTGACTTGATATATTTTGACCATACTTTTCTACTAATTCACAAAGATAAATAATATCATGTAAGATGTTGTTGGATTCGTCTCGATGAGTATTTTTAAAATATTAAATTTTTATAATTTTTTTTAGTAGAGAATTGAAGATATCAAAGATAAAACATATGCATTGGTATGTGTGTCAGAGTCAACTAGGTCATTTATTTAGGGACGTAGGGAGTA

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