Plant MITE

SE2020116

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5318
Medicago truncatula
SE2020116
Mutator
M8
MtChr2:29730892-29731191
TTAAATAAG
AAGAGTTAATTAAGTAAATGGTCCCTATAAATATTCAGAATTTTGTTTTTAATCCTTATAAAATAAAATCACACTTTTTAGTCATTGTAATATTTTCCTTTAGCATTTTAGAGACC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAT   A                                               A                   CA          A      -TA     CT   G      AG GA  GAAACACT   GTAAATCTTTTATAGAG
      AAG GTTAATTAAGTAAATGGTCCCTATAAATATTCAGAATTTTGTTTTTA TCCTTATAAAATAAAATCA  CTTTTTAGTC TTGTAA   TTTTC  TTA CATTTT  A  CC        GAT                 
      ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||||   |||||  ||| ||||||  |  ||        |||                 A
      TTC CAATTAATTCATTTACTAGGGATATTTATAAGTCTTAAAATAAAAAT AGGGATATTTTATTTTAGT  GAAAAATTAG GATATT   AAAAG  AGT GTAAAA  T  GG        AAA                 
ATAAAT   C                                               C                   AC          G      TTC     -C   A      AA -A  AAGATTTT   ATGTAGTTGTAAAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020116

TTAAATAAGAGTTAATTAAGTAAATGGTCCCTATAAATATTCAGAATTTTGTTTTTAATCCTTATAAAATAAAATCACACTTTTTAGTCATTGTAATATTTTCCTTTAGCATTTTAGAGACCGAAACACTGATGTAAATCTTTTATAGAGACTAAAAATGTTGATGTAAAATTTTAGAAGGATAAAAAATGATGACGAAAACTTTTATAGGGATTAAAAAGCATGATTTTATTTTATAGGGACTAAAAATAAAATTCTGAATATTTATAGGGATCATTTACTTAATTAACCCTTTAAATA

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