Plant MITE

SE2010119

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5321
Medicago truncatula
SE2010119
Tc1/Mariner
St4
MtChr5:38644316-38644459
N.A.
G

Secondary structure and sequence

TSD TIR

5'

3'

TACTCCCTCC    TAAAATATAAGCAAAATTTATTTTTTAGGTTCATTCATTTAATGATGTATGTGATCCATGAA
          GTTT                                                              
          ||||                                                              C
          TGAG                                                              
         T    TACAACCTATAGTCGTATTCATTTTAAATAAAAAATCCAAGTAAGTAAATTACTACATACAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010119

TACTCCCTCCGTTTTAAAATATAAGCAAAATTTATTTTTTAGGTTCATTCATTTAATGATGTATGTGATCCATGAACCACATACATCATTAAATGAATGAACCTAAAAAATAAATTTTACTTATGCTGATATCCAACATGAGTT

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