Plant MITE

SE2030120

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5322
Medicago truncatula
SE2030120
hAT
Hat14
MtChr8:10238630-10239201
GTTGAGTC
G

Secondary structure and sequence

TSD TIR

5'

3'

GTT    CCTATGAAACATGGACTCCGACACGGACACCTGACACGACACTGATATGGACACTTCGACACTGTTAGTGTAAAAAATATAGGACACCGACACCATTATGTATATATTAATTTATTTATAGATAGTCTAAAATGAAAATCAAAATACATATATAAGTATCTAATTTGAGCAAATTATTTCATTAGAAAAAGTTATAAAACAAGATATCACAGTATTTGACATTTATTTATTCATCTACTATCAAAAAAGCTAAAAATGTTATATGTCTATAACCTCCCA
   GAGT                                                                                                                                                                                                                                                                                       
   ||||                                                                                                                                                                                                                                                                                       G
   GAGT                                                                                                                                                                                                                                                                                       
 CT    TGGATACTTCGTGCCTGTGGAGAACTTGGTCGGCATAATGCCACAGGCTGTGAGGATACTGTGAGCATGCTGTGCATAGTCTGTTGATTTTAGCCACAGGATTTATTTTAACAAAAAAGAAATTAAGTTGTGAGAATTCTGGCCACAGACTGTGGATATATTGTGAATATTCTCGGCACACAGCCTGTTGATTCTGCTTATAGACTTTATAAAAAAAGAGAGAACGAAGGTGTAAGGCATCTATGTTCTCAATGTATACAAAACTTTTTACAACTAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030120

GTTGAGTCCTATGAAACATGGACTCCGACACGGACACCTGACACGACACTGATATGGACACTTCGACACTGTTAGTGTAAAAAATATAGGACACCGACACCATTATGTATATATTAATTTATTTATAGATAGTCTAAAATGAAAATCAAAATACATATATAAGTATCTAATTTGAGCAAATTATTTCATTAGAAAAAGTTATAAAACAAGATATCACAGTATTTGACATTTATTTATTCATCTACTATCAAAAAAGCTAAAAATGTTATATGTCTATAACCTCCCAGTTGATCAACATTTTTCAAAACATATGTAACTCTTGTATCTACGGAATGTGGAAGCAAGAGAGAAAAAAATATTTCAGATATTCGTCTTAGTTGTCCGACACACGGCTCTTATAAGTGTTATATAGGTGTCAGACACCGGTCTTAAGAGTGTTGAATTAAAGAAAAAACAATTTTATTTAGGACACCGATTTTAGTTGTCTGATACGTGTCGTACGAGTGTCATAGGAGTGTCGGACACCGTAATACGGCTGGTTCAAGAGGTGTCCGTGCTTCATAGGTTGAGTC

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