Plant MITE

SE2020121

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5323
Medicago truncatula
SE2020121
Mutator
M2
MtChr4:31663309-31663511
ATAACTAAA
GAGAAATGATATTTGTACAACCATTT

Secondary structure and sequence

TSD TIR

5'

3'

ATAACTAAA   A    A      T   A C    -CTTA      TTTG        TTCTCTCTCATACTCACATT          TTTCTCTCTCTAT  CT     TTT
         GAG AATG TATTTG ACA C ATTT     ACAACT    TGACAACT                    ATATTTTTAC             TG  TTGGT   
         ||| |||| |||||| ||| | ||||     ||||||    ||||||||                    ||||||||||             ||  |||||    
         CTC TTAC ATAAAC TGT G TAAA     TGTTGG    ACTGTTGG                    TATAAAAATG             AC  AACCG   
AAATCAATA   G    A      T   A T    CCAAC      TGTA        --------------------          --TTTCTTTTCAT  AC     TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020121

ATAACTAAAGAGAAATGATATTTGTACAACCATTTCTTAACAACTTTTGTGACAACTTTCTCTCTCATACTCACATTATATTTTTACTTTCTCTCTCTATTGCTTTGGTTTTTGTGCCAACACATACTTTTCTTTGTAAAAATATGGTTGTCAATGTGGTTGTCAACCAAATTGATGTTCAAATAACATTGCTCATAACTAAA

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