SE2030125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5327
  • Medicago truncatula
  • SE2030125
  • hAT
  • Hat15
  • MtChr2:26803363-26803744
  • TTCTTAGT
  • CTTAGTCAGTGGCGGATCTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT  T  -T               AACTTTTTT    G       A      - -- -T   -------  AT   TATATATCAGTTTTAAAATATTAATGAAATAATGAATTAGCCTAGTGGTTTATTTTCCTAGAACAACTATAGGGAACGGTGGTTCGATTCCCAGTAAGACCTCTTTTTTTGAGTAAAGTATTAA
  CT AG  CAGTGGCGGATCTTG         TCTG GGGTGCC AATATT T  T  AGA       AT  ATA                                                                                                                            
  || ||  |||||||||||||||         |||| ||||||| |||||| |  |  |||       ||  |||                                                                                                                             
  GA TC  GTCACCGCCTAGAAC         GGAC TCCACGG TGACGT G  G  TGA       TT  AAT                                                                                                                            
 T  T  TT               --CACCCCT    G       -      A GG AT   AATGATA  --   AGTATAATACGTACTATTAAGTTTGCCTCGTAACAACAACGTCACCTAATCACTCAAAGCTTTGGGGGGTCGACGCACCCAAACTAGGAGCAATCGACAAAAAAAATATAAAAGTTAACATAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End