SE2020126

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5328
  • Medicago truncatula
  • SE2020126
  • Mutator
  • M50
  • MtChr2:28577436-28577832
  • CTTTACTAT
  • GGATTAATAGTGTTTTACCCCCTTGTAATATAAGTCATTTTCGATTTTACCCCCTGTAAAATATTTTTTTTTGGATTTCGTCCTTGTAATTTGAATATTTTTGGTTTTGGACCTTCATGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTACTATTTT  A              CC          A  A        C A    A   C          TT                         T    -TA                        TTTTGA   -- ACAAAATC AAGATATACCAGGGGGTAAACTGAAATTTTCTCAAATTAACAGGGGGTAAAT
            GG TTAATAGTGTTTTA  CCCTTGTAAT TA GTCATTTT G TTTT CCC CTGTAAAATA  TTTTTTTGGATTTCGTCCTTGTAAT TGAA   TTTTTGGTTTTGGACCTTCATGAA      CTG  T        G                                                    
            || ||||||||||||||  |||||||||| || |||||||| | |||| ||| ||||||||||  ||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||      |||  |        |                                                     
            CC AATTATCACGAAAT  GGGGACATTA AT CAGTAAAG C AAAA GGG GACATTTTAT  AAAAAAACTTAAAGTAGGAACATTA GCTT   AAAAACCAAAACCTGGAAGTACTT      AGT  G        G                                                    
    TTTATCAT  C              TA          A  C        A C    A   A          -T                         T    CTA                        -TTTAA   GG -------- GACATCAAACTCTTTTAAATCCAAATGGGGGAATATTAAACTCGTTTAAAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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