Plant MITE

SE2020128

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5330
Medicago truncatula
SE2020128
Mutator
M8
MtChr4:26443453-26443688
TTATATTTG
GGGTTAATTAAGTAAATGATCCCTATAAATATTCAGAATTTTGTTTTTAGTCTCCACAAAATAAAATCA

Secondary structure and sequence

TSD TIR

5'

3'

TTATATTT             AAA                   G A                C       A      CACT    T      ATAAAA      -ATCAA      TAGT
        GGGTTAATTAAGT   TGATCCCTATAAATATTCA A TTTTGTTTTTAGTCTC ACAAAAT AAATCA    TTTT GTCCCT      ATTTTC      CATTTT    
        |||||||||||||   ||||||||||||||||||| | |||||||||||||||| ||||||| ||||||    |||| ||||||      ||||||      ||||||     
        CTCAATTAATTCA   ATTAGGGATATTTATAAGT T AAAACAAAAATCAGGG TGTTTTA TTTAGT    AAAA TAGGGA      TAAAAG      GTAAAA    
  TTCTTT             AAA                   G C                A       G      TTAC    T      -CACTG      GAATTC      TCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020128

TTATATTTGGGTTAATTAAGTAAATGATCCCTATAAATATTCAGAATTTTGTTTTTAGTCTCCACAAAATAAAATCACACTTTTTTGTCCCTATAAAAATTTTCATCAACATTTTTAGTCCCTAAAATGCTTAAGGAAAATGTCACAGGGATTAAAACATTTGATTTGATTTTGTAGGGACTAAAAACAAAACTGTGAATATTTATAGGGATTAAAAACTTAATTAACTCTTTCTT

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