SE2020132

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5334
  • Medicago truncatula
  • SE2020132
  • Mutator
  • M52
  • MtChr5:10518031-10518435
  • ATAAATTAA
  • TAAATTAAGGCTAAATTGTATTTTTGGTCCCTTAACTATTTAGGTAGTATCGCTTTGGTCCCTTAACTAAAATTTGATTTATTTTGCTCCTTTAACTTATCTCCGTTACACATTTTGGTCATTTCGGTTAGTTTTAATTCAAAAACGTTAGGTTTTCTTCATTTTCTT

Secondary structure and sequence

TSD    TIR
5'



3'
A   A   A                                                     C    C                   C           A    C                A   CG                                          ATGGAA      TGGGA   T       GAAGGT
 TAA TTA GGCTAAATTGTATTTTTGGTCCCTTAACTATTTAGGTAGTATCGCTTTGGTCC TTAA TAAAATTTGATTTATTTTG TCCTTTAACTT TCTC GTTACACATTTTGGTC TTT  GTTAGTTTTAATTCAAAAACGTTAGGTTTTCTTCATTTTCTT      TTTTTC     TTC TGTTGTT      
 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||      ||||||     ||| |||||||      T
 ATT AAT CCGATTTAACGTAAAAACTAGGGAATTGATAAATCCATCATAGCGAAACCAGG AATT ATTTTAAACTAAATAAAAT AGGGAATTGAA AGAG CAATGTGTAAAACCAG AAA  CAATCAAAATTAAGTTTTTGCAATCCAAAAGAAGTAGAAGAA      AAAAAG     AAG ATAGTAG      
A   A   A                                                     A    C                   C           G    A                G   AA                                          GAGGAG      --TAG   T       AGGTGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End