Plant MITE

SE2020134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5336
Medicago truncatula
SE2020134
Mutator
M18
MtChr1:15482419-15482635
TGAGATATT
TGCTAGTATGAGTAATACTAGGGACACTCTCTTTTCAACACTCTCTCTAACACTCACTCTCTTATTGGATGAAACTAGTGTATGTCCCATCACCTTAAGTGGAACCCATTTCCAATGTGTGAGACCCACCTTGATTTAAACCAATAATAAAGTGGGTGTTTAAGAGAGTGTTGAAAAGAGAGTGTTACTAGCACTACTCTTGCTAGTA

Secondary structure and sequence

TSD TIR

5'

3'

TGAGATAT        T     ATA    GG                       CT          CTC       -A    A T  T  AT   C  T   C  --      A
        TGCTAGTA GAGTA   CTAG  ACACTCTCTTTTCAACACTCTCT  AACACTCACT   TTATTGG  TGAA C AG GT  GTC CA CAC TT  AAGTGG 
        |||||||| |||||   ||||  |||||||||||||||||||||||  ||||||||||   |||||||  |||| | || ||  ||| || ||| ||  |||||| A
        ATGATCGT CTCAT   GATC  TGTGAGAGAAAAGTTGTGAGAGA  TTGTGGGTGA   AATAACC  ATTT G TC CA  CAG GT GTG AA  TTTACC 
       T        T     CAC    AT                       AT          AAT       AA    A T  -  CC   A  -   T  CC      C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020134

TGAGATATTGCTAGTATGAGTAATACTAGGGACACTCTCTTTTCAACACTCTCTCTAACACTCACTCTCTTATTGGATGAAACTAGTGTATGTCCCATCACCTTAAGTGGAACCCATTTCCAATGTGTGAGACCCACCTTGATTTAAACCAATAATAAAGTGGGTGTTTAAGAGAGTGTTGAAAAGAGAGTGTTACTAGCACTACTCTTGCTAGTAT

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