Plant MITE

SE2010135

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5337
Medicago truncatula
SE2010135
Tc1/Mariner
St2
MtChr4:32838360-32838637
TA
TACTCCCTCCGTTTCAAAATACATGTCCATTTTGGAGGA

Secondary structure and sequence

TSD TIR

5'

3'

                A     A                ATTGTACTAAC     A  CAAATAAATT             ---T   --     ATGTGTGTTTTCTATAATACCCTTAATCATTAATTATTTCATTTTACTTTT
TACTCCCTCCGTTTCA AATAC TGTCCATTTTGGAGGA           CAAAA AC          TTGTTATTTTTAA    GAA  AATAT                                                   
|||||||||||||||| ||||| ||||||||||||||||           ||||| ||          |||||||||||||    |||  |||||                                                   T
ATGAGGGAGGCAAAGT TTATG ACAGGTAAAATCTCTT           GTTTT TG          AACAGTGAAAGTT    GTT  GTTGT                                                   
                A     A                ATTAAAACAAA     A  ----------             CAAA   AC     AATTAATAACTGAACAGTTATTATGGGAACGTATAAATAACATCTCTCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010135

TACTCCCTCCGTTTCAAAATACATGTCCATTTTGGAGGAATTGTACTAACCAAAAAACCAAATAAATTTTGTTATTTTTAATGAAAATATATGTGTGTTTTCTATAATACCCTTAATCATTAATTATTTCATTTTACTTTTTTCTCTCTCTACAATAAATATGCAAGGGTATTATTGACAAGTCAATAATTAATGTTGCATTGAAACTTGAAAGTGACAAGTATTTTGAAACAAAATTATTCTCTAAAATGGACAAGTATTATGAAACGGAGGGAGTA

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