SE2020136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5338
  • Medicago truncatula
  • SE2020136
  • Mutator
  • M12
  • MtChr5:3216235-3216489
  • TAAAGATTT
  • GGGTGCGGTTATGGTGCATAAGGAAATCCTTATGCACCCTGCATAAATTTAGAAATGGTTTTGGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAGATTTT  G              A                   CC  C         G        -   -    -A    --          CATTTGCACTTCAAAATGATTTTTGCATAATTGGGTT
          GG TGCGGTTATGGTGC TAAGGAAATCCTTATGCAC  TG ATAAATTTA AAATGGTT TTG GAGT  CAAC  TTACAGAAAT                                     
          || |||||||||||||| |||||||||||||||||||  || ||||||||| |||||||| ||| ||||  ||||  ||||||||||                                     G
          CC ACGCCAATACCACG ATTCCTTTAGGAATACGTG  AC TATTTAGGT TTTACCAA GAC CTCA  ATGA  TTTTGGTAAT                                     
         G  G              C                   AT  A         A        A   A    AT    GG          CTACATGAATTACCAAAGGTCGTTAGACGTATTTAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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