SE2020138

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5340
  • Medicago truncatula
  • SE2020138
  • Mutator
  • M31
  • MtChr2:146317-146699
  • TAATATAAT
  • GGCTAAAATATGGTTTTGGTCCCTGCAAATATGTTTCGTTTTGGTTTTAGTCCCTGTAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATATAAT                                                              AAAA                      -----    ----     ---     --  --   ---    CCCTGCAGGGACTATTTCCAAAAACAAAATATTTTGCAGGGACCTTTTTCAAAATCAAAAGA
         GGCTAAAATATGGTTTTGGTCCCTGCAAATATGTTTCGTTTTGGTTTTAGTCCCTGTAAAAA    TTGTTGTTTTTGGTCCCTGCAA     AATA    TTTTG   TTTTT  GG  AAA   TAGT                                                              
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||     ||||    |||||   |||||  ||  |||   ||||                                                               
         CTGATTTTATACCAAAACCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACGTTTTT    AACAACAAAAACCAGGGACGTT     AGAG    ACCAA   CAGGG  CG  GTG   ACAC                                                              
TAATATAAT                                                              AAAA                      TATAC    TAAA     AAC     AC  AG   AAA    TATTAAACGTGTGCACAGTGTACTACTGACTTGGTAAATAATCTCTTTATCAGGGACGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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