SE2020139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5341
  • Medicago truncatula
  • SE2020139
  • Mutator
  • M53
  • MtChr8:26025882-26026305
  • CGATCTTTA
  • GATC

Secondary structure and sequence

TSD    TIR
5'



3' 
  C    TTTA  CAAG     AA        ---AACA    - A  GTATTGATACACCAAATCTTTAAATTAATAGTTAAATGAGTTATTTTTTGTAGGAAAAAATTATTTTATATCACCTATAATTATAATAACTAAATCTTATTTACCAAAAACGTCAACGCAATAAAATTTGATATTTCTGAATTCTTATTACTCATAATAGAGAATTTTT
   GATC    GG    TTCTA  GTACATCC       ATTT G GT                                                                                                                                                                         
   ||||    ||    |||||  ||||||||       |||| | ||                                                                                                                                                                          
   CTAG    CC    AAGAT  CATGTGGG       TGCT C AT                                                                                                                                                                         
TTT    --CC  -CTA     AC        CACTTAA    A -  GGCCATGAGAGCAAATATTAAAAATATTTAATTGATAGTAAAAAATACTTCTTTTATCCACAAACAACTGTATATATAAAATCTTTTATAGTAAAATATACTTTTTTTGTAGTAAAGTAAACAATATTTTTAGTATGATTAAAAAAATGTAAAATAACATTTTTTATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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