SE2020140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5342
  • Medicago truncatula
  • SE2020140
  • Mutator
  • M55
  • MtChr5:5596385-5597072
  • AAACTTTAG
  • GGCCAAATATCATGTTTGGTCCTTTTAATTTGACTGAATTTTTAAGTTACTTCTTTAAGTTTTGAAAGTTTCAATTATGTCATTTTAATTTGACAGAATTCCTAAGTTATCCTTTAAGTTTTAAAAGTTTCAAATAAGTCATTTTAGTTAATAAACTATTTCACCGTTACCCCTGCTGTCAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAACTTTAG  C          GTT           A     C               C  C                  C         A     A             C       -            T              A            A                                  AATAA     TAATA   CT                 T       T        C         -        CAA          C          ATC                CTA   ATATAAATGTCGTTTAATAGTGCTAGAAAGGC
         GG CAAATATCAT   TGGTCCTTTTA TTTGA TGAATTTTTAAGTTA TT TTTAAGTTTTGAAAGTTT AATTATGTC TTTTA TTTGACAGAATTC TAAGTTA TCCTTTAAGTTT AAAAGTTTCAAATA GTCATTTTAGTT ATAAACTATTTCACCGTTACCCCTGCTGTCAGTT     TTAAC     ATG  GATGTAGCCGTTAAGTT TTGACTT GATCAAAA GTTGTCTTT AAAAGCTC   GGTGTCAAAA GTTACGTTTA   GTCACAAATGATCATT   GCA                                
         || ||||||||||   ||||||||||| ||||| ||||||||||||||| || |||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||     |||||     |||  ||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||   |||||||||| ||||||||||   ||||||||||||||||   |||                                A
         CC GTTTATAGTG   ACCAGGAAAAT AAACT GCTTAAGAGTTCAAT AG AAATTTAAAGCTTTTAAA TTAATACAG AAAAT AAATTGTCTTAAG GTTCAAT AGGAAATTCAAG TTTTCAAAGTTTAT CAGTAAAATCAA TATTTGATAAAGTGGTAATGGGGACGGCAGTCAG     AATTG     TAC  CTACATTGGCAATTCAA AACTGAA TTAGTTTT CGACGGAAA TTTTCGGG   CCACAGTTTT CGATGCAAAT   TAGTGTTTACTAGTAA   TAT                                
GATTTCAAA  A          AAT           C     A               C  T                  A         G     C             A       C            -              C            C                                  AGACA     ----C   AT                 C       T        A         A        CTA          A          AAC                --A   CACGATCTTTCTGTTGATAAATGCTGTTGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End