SE2050142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5344
  • Medicago truncatula
  • SE2050142
  • PIF/harbinger
  • To4
  • MtChr3:20940849-20941075
  • TTA
  • AGGGCTCGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G         -ATTAA        A        AT    C                       T   GTATT        T      ----------AG   -G        AAA
  AGG CTCGTTTGG      CTTATTTT GAGCTTAT  AAAA AGCTTATGTAAATAAATAAGTTT TAT     ATTTATAA TTTTTA            GTA  TTTATGAA   
  ||| |||||||||      |||||||| ||||||||  |||| ||||||||||||||||||||||| |||     |||||||| ||||||            |||  ||||||||   A
  TCC GGGCAAACC      GAATAAAA CTCGAATA  TTTT TCGAATACATTTATTTATTCAAA ATA     TAAATATT GAGAGT            CAT  AAGTATTT   
AT   G         AAACCC        -        CT    A                       T   -AAAT        C      GATTGCTTTTAA   AG        GAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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