Plant MITE

SE2010144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5346
Medicago truncatula
SE2010144
Tc1/Mariner
St12
MtChr5:1725588-1725742
TA
TACACCTTCTG

Secondary structure and sequence

TSD TIR

5'

3'

           ATCAA             ----CACC         G               T      C  G  AATA
TACACCTTCTG     TATTATAAGCAAA        CACTTTTTA GTTCATTGAATAACT GTGTAT TG TC    
|||||||||||     |||||||||||||        ||||||||| ||||||||||||||| |||||| || ||    T
ATGTGGGAGGC     ATAATATTTGTTT        GTGAAAAAT CAAGTAACTTATTGA TACATA AC AG    
           CAATG             TTTTTTTA         A               C      C  G  ACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010144

TACACCTTCTGATCAATATTATAAGCAAACACCCACTTTTTAGGTTCATTGAATAACTTGTGTATCTGGTCAATATTACAGAGCACATACATCAGTTATTCAATGAACATAAAAAGTGATTTTTTTTTTGTTTATAATAGTAACCGGAGGGTGTA

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