SE2020152

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5354
  • Medicago truncatula
  • SE2020152
  • Mutator
  • M58
  • MtChr4:27346380-27346758
  • TTGTTTTTA
  • AGGCTAAAATATGGTTTTGGTCCCTGCAAATATGTCTCACTTTGGTTTTAGTCCTATTGAAATTTTTGTTGTTTTTGATCCTGCAAATATTTTGTTATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTTTT         -                G       G   CAC            -   ATT A         --        -A           --       A   AAAACA      CC  -    TATTTTCAAAAGTAAAATATTTTGCAGGGATCTTTTTAAGAATAAAGAGATTTTGCATAG
        AGGCTAAAA TATGGTTTTGGTCCCT CAAATAT TCT   TTTGGTTTTAGT CCT   G AATTTTTGT  TGTTTTTG  TCCTGCAAATA  TTTTGTT TTG      GTCTCT  AG GAAC                                                            
        ||||||||| |||||||||||||||| ||||||| |||   |||||||||||| |||   | |||||||||  ||||||||  |||||||||||  ||||||| |||      ||||||  || ||||                                                             
        TCCGATTTT ATACTAAAATCAGGGA GTTTATA AGA   AAACCAAAATCA GGA   C TTAAAAACA  ACAAAAAC  GGGACGTTTAT  AGAGCAA AAC      CAGGGA  CG GGTG                                                            
ATTTTTGT         T                G       A   ACA            A   --- A         AA        CA           AC       -   CAAAAC      -T  G    AAAACACTACTACACATCTGCACCGTGTACTACTCACTTAGGTAAATAATCTTTTTATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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