SE2020155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5357
  • Medicago truncatula
  • SE2020155
  • Mutator
  • M19
  • MtChr5:30005652-30006134
  • AAAAAAAAA
  • GGTTAAATATGTTTTTGGTCCCTATAAATATACCAACTTTTTCGTTTTAATCCCCCTAAAATTTTCCTTCAACTTTTAGTCCCTAAAAAAATTTTCATC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAAAAAG                 G                        C      A    C                          C   AA          -  TTCA         A  CT        ---AAACTCATA     AATTCATATTTTTGAATAAAAATTTGCAGAAAAATTCTTAATATTATAAGAATCTTACCCCAAAAAGTTTAGAATTTTTTAACAAAACATAAATT
          GGTTAAATATGTTTTTG TCCCTATAAATATACCAACTTTTT GTTTTA TCCC CTAAAATTTTCCTTCAACTTTTAGTC CTA  AAAATTTTCA TC    CTTTTGGTC CT  TTTAAAGT            TGTAG                                                                                               
          ||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||  |||||||||| ||    ||||||||| ||  ||||||||            |||||                                                                                                
          CCAATTTATACAAAAAC AGGGATATTTATATGGTTGAAAAA CAAAAT AGGG GATTTTAAAAGGAAGTTGAAAATCAG GAT  TTTTAAAAGT AG    GAAAACTAG GA  AAATTTCA            TAAAG                                                                                               
       AAA                 G                        -      C    A                          A   -A          C  TGAC         G  TT        ATTAAAATCATA     TTACTTTAACATGTGTTTACACATCTTATAACATTTTTTTTAATGTTTTTCTTTAATCTTAAAAAATTGGTATTTTTTATATTTTTAAGTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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