SE2010161

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5363
  • Medicago truncatula
  • SE2010161
  • Tc1/Mariner
  • St14
  • MtChr2:16943496-16943794
  • TA
  • TACTACCTCCGTCCCTAATTATAAGACCCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                TGAAAAAATAA        AAGATAGTGG    -   TATTAAATATGTTTGTAATAACTATTGTTTTTACAATTTTATCCTTTAAGAAAGAGAGCTGACTTATGCTTTCAACATTCTATTTATTGT
TACTACCTCCGTCCCTAATTATAAGACCCTTT           CGGGAATT          ATAT TTG                                                                                          
||||||||||||||||||||||||||||||||           ||||||||          |||| |||                                                                                          T
ATGATGGAGGCAGGGATTAATATTCTGGGAAA           GCTCTTAA          AAAA AGG                                                                                          
                                -----------        --------AA    C   GAAAAATATTCTGGGAAAAAGATAAAGGTTGATGTAATTAATAAAGAAATGTATGTACGGGGATAAATAATATGTAGAAAAAGAAGTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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