Plant MITE

SE2010162

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5364
Medicago truncatula
SE2010162
Tc1/Mariner
St16
MtChr2:24632221-24632503
TA
TATTCCCTCCGTTTCAAAATGAGTGTCGTTT

Secondary structure and sequence

TSD TIR

5'

3'

      C  C    C                AAGATTTTTACACACATATTAA        ---  AA  AAAAGAAAGAGAGATGTTATTTTACCAAATTATCCTAATCAACTATTGGTTTGTTTTTCATTAAAGAAAAAATAATACTTTGAAA
TATTCC TC GTTT AAAATGAGTGTCGTTT                      GAAATACA   TT  TT                                                                                     
|||||| || |||| ||||||||||||||||                      ||||||||   ||  ||                                                                                      
ATGAGG AG CAAA TTTTACTCATAGTAAA                      ATGGGGTT   TA  AC                                                                                     
      T  A    A                ----------------------        TTT  --  AAAATTTTACTTACAGTGAAAGTCAAAAGTTACGTTATTGAAAAAGAAAAGTTAATATGGGAAGTTAATTATAATATATGTGATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010162

TATTCCCTCCGTTTCAAAATGAGTGTCGTTTAAGATTTTTACACACATATTAAGAAATACATTAATTAAAAGAAAGAGAGATGTTATTTTACCAAATTATCCTAATCAACTATTGGTTTGTTTTTCATTAAAGAAAAAATAATACTTTGAAAGTAGTGTATATAATATTAATTGAAGGGTATAATTGAAAAGAAAAAGTTATTGCATTGAAAACTGAAAGTGACATTCATTTTAAAACAATTTTTTGGGGTAAAATGATACTCATTTTAAAACAGATGGAGTA

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