SE2020164

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5366
  • Medicago truncatula
  • SE2020164
  • Mutator
  • M63
  • MtChr4:12018858-12019189
  • TAATTATTA
  • TAATTATTAGGCTTAAATTTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    T             TTA    TTTT   C   TA        C               T             T       TTG  -  CTGTCTTTAGGAAAATATGCTTTTTTTATCCTCTAACTTTAGAAAAATATGCTATTTTGGCCATTTATCTTTATAAA
TAAT ATTAGGCTTAAAT   GTTT    CCC TTA  TTTTAAAA GTTGCGATTTTGGCT CTTAATAAAAATA AAAAAGT   TC CT                                                                             
|||| |||||||||||||   ||||    ||| |||  |||||||| ||||||||||||||| ||||||||||||| |||||||   || ||                                                                             A
ATTA TAATCCGAATTTA   TAAA    GGG AAT  AAAATTTT CAACGCTAAAACCGG GGATTGTTTTTTT TGTAAAA   AT GG                                                                             
    T             -TG    CACT   A   TG        T               -             -       ---  G  ATAATAAAAATGTTTTACAACGTTTCGACGACTCTTCTGCGGTGCACAGGAATCTGTTCCCCGGTTTTTAACGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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