Plant MITE

SE2020171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5373
Medicago truncatula
SE2020171
Mutator
M66
MtChr3:23390660-23390968
AAAATAAAG
AGGTTTAATTGCACTTTTGGACCTCTATCTTTTAAAAAGTTGCGGTTATGGCCCCTAACTAATTTAAATACAAAACAACCCCCTATATTTTAATTTTTTGGCAGTTTTGGACCCCCAATCCATTAGTGAGGTGCCACGTG

Secondary structure and sequence

TSD TIR

5'

3'

AAAATAA           C                     A        C            -                      AC C     A                          C   A                      GCCCCTA
       AGGTTTAATTG ACTTTTGGACCTCTATCTTTT AAAAGTTG GGTTATGGCCCC TAACTAATTTAAATACAAAACA  C CCTAT TTTTAATTTTTTGGCAGTTTTGGACC CCA TCCATTAGTGAGGTGCCACGTG       
       ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||        
       TCCAAATTAAC TGAAAACCTGGAGATAGAAAA TTTTCAAC CCAATACCGGGG ATTGATTAAATTTATGTTTTGT  G GGATA AAAATTAAAAAACCGTCAAAACCTGG GGT AGGTAATCACTCCACGGTGCAC       
AATAAAA           A                     G        A            G                      CA A     C                          A   C                      ATAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020171

AAAATAAAGGTTTAATTGCACTTTTGGACCTCTATCTTTTAAAAAGTTGCGGTTATGGCCCCTAACTAATTTAAATACAAAACAACCCCCTATATTTTAATTTTTTGGCAGTTTTGGACCCCCAATCCATTAGTGAGGTGCCACGTGGCCCCTAAATAATACACGTGGCACCTCACTAATGGACTGGAGGTCCAAAACTGCCAAAAAATTAAAACATAGGAGACTGTTTTGTATTTAAATTAGTTAGGGGGCCATAACCACAACTTTTGAAAAGATAGAGGTCCAAAAGTACAATTAAACCTAAAATAA

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