SE2050172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5374
  • Medicago truncatula
  • SE2050172
  • PIF/harbinger
  • To7
  • AC233659:12354-13069
  • TAA
  • AGGCCCCGTTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C           AAACAA     ATA  T       GCATTA        AACATT     --   CATCATAAGCTCTTATACTTGATAAGCTATTTATGTTTGGATATGTACACTAAAAAGTACTTACATAAATTGAAGTGTTTGGATCTGACATTACATTAGCAATTATCGAAATTTTAAATATTTTTAATTTAACAAAAAAATCAAAGAATCGAACCACAAAAATCAAAGATAATAGTGTACAGTTTGTTACCAAAAAAAGACAAGTTAAGTTTGTTTTATTTATTCAGTTTCATTTTGTTACGTAACAAAAAAATAATAAAAATCTTCCTTAAAAAAAAATAATCTTAGTTATGTG
  AGG CCCGTTTGGAT      CTTAT   GA GCTTATG      GGGCTTAT      AGAGC  TTA                                                                                                                                                                                                                                                                                                       
  ||| |||||||||||      |||||   || |||||||      ||||||||      |||||  |||                                                                                                                                                                                                                                                                                                        
  TCC GGGCAAACCTA      GAATA   CT CGAATAT      CCCGAATA      GTGAG  TAT                                                                                                                                                                                                                                                                                                       
AA   A           ---ACC     AAA  -       -----A        -----G     AG   TCGAAAAAATTTCCACAAACCTATTTATTTATTTTTATCGAATAGTATCAAAGTATTCAACGAATACGGTATAAAATTATTCGGATTTAAAAGTCGAATGGGAGGCCGAATTGTTCCTCGAATACTTAAATACATTGGTGGAAGCTAAGAGAGACCTAGGTGAAAAAGTTTTGTATATAAAATTAAAAAAACAAAAACAAAAATCTTTGTTTGTATATAAAATTAATATTACAACCAATAGAAACCGCCACGTACTCATTGTTTTAACGATATATGAATAGAATGGTTTCATTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End