Plant MITE

SE2020173

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5375
Medicago truncatula
SE2020173
Mutator
M2
MtChr4:31663309-31663511
TTTAGTTAT
GAGCAATGTTATTTGAACATCAATTTGGTTGACAAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTAGTTAT   C    T      A   TCA    GG        CACAT       --------------------C          -AAAGAAAAG   -  G    CACA
         GAG AATG TATTTG ACA   ATTT  TTGACAAC     TGACAAC                     ATATTTTTAC          TAT GT TTGG    
         ||| |||| |||||| |||   ||||  ||||||||     |||||||                     ||||||||||          ||| || ||||     
         CTC TTAC ATAAAC TGT   TAAA  AATTGTTG     ACTGTTG                     TATAAAAATG          ATA CG AACC    
TATTGATTT   T    T      A   TGG    -G        AAAAC       AAAGAGAGAGTATGAGTGTAA          AAAGAGAGAG   A  A    AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020173

TTTAGTTATGAGCAATGTTATTTGAACATCAATTTGGTTGACAACCACATTGACAACCATATTTTTACAAAGAAAAGTATGTGTTGGCACAAAAACCAAAGCAATAGAGAGAGAAAGTAAAAATATAATGTGAGTATGAGAGAGAAAGTTGTCACAAAAGTTGTTAAGAAATGGTTGTACAAATATCATTTCTCTTTAGTTAT

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