SE2020174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5376
  • Medicago truncatula
  • SE2020174
  • Mutator
  • M4
  • MtChr1:14279628-14279987
  • AAAATATAG
  • TAGGGTTAATAGTGCTTTACCCCCTGTAATATAGGTCATTTCCGGTTTCCCCCCTGTAAAATATTTTTTTTGAATTTCATCCTTGTAATTTGAAGATTTTTTGGTTTTGGACCTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATA              C         -             AT         -C              T        A     A                      T       GA           A  TTC  TCCATGTAATTTGAGAAAATTTAGGTTTACCCCCCCGTTAATTTG
      TAGGGTTAATAGTG TTTACCCCC TGTAATATAGGTC  TTCCGGTTT  CCCCCTGTAAAATA TTTTTTTG ATTTC TCCTTGTAATTTGAAGATTTTT GGTTTTG  CCTTCATGGAA AT   GC                                             
      |||||||||||||| ||||||||| |||||||||||||  |||||||||  |||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||||  ||||||||||| ||   ||                                             A
      ATCCCAATTATCAC AAATGGGGG ACATTATATCCAG  AAGGCCAAA  GGGGGACATTTTAT AAAAAAAC TAAAG AGGAACATTAAACTTCTAAAAA CCAAAAC  GGAAGTACTTA AA   AC                                             
TATAAA              A         G             CT         AT              T        C     C                      -       AC           -  ---  TGACATGTTTTAGCTTCTATACCGTCTCCCATTTGGCTTTAAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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