SE2020176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5378
  • Medicago truncatula
  • SE2020176
  • Mutator
  • M12
  • MtChr8:5922798-5923051
  • ATGTACGTG
  • ATGTACGTGTGGCTGAGGTTATGATGTCCTTATGCACTTTACATAAATTTAGAAATGGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
           T  C  A       A   ---------- C       -    A          G         ---CTG   - TTGTATTTCAAAACTATTAGATGTACTTAATGGTTTCCAACACTCTGCATAA
  ATGTACGTG GG TG GGTTATG TGT          C TTATGCA CTTT CATAAATTTA AAATGGTTT      TGA G                                                    
  ||||||||| || || ||||||| |||          | ||||||| |||| |||||||||| |||||||||      ||| |                                                     
  TGCATGTAC CC AC CCAATAC ACG          G AATACGT GGAG GTATTTAGGT TTTACCAAA      TGT G                                                    
TG         -  -  G       C   TATTCCTTTA A       A    -          A         AGTTCA   T AGTGTATTTAGTAAAGGTGTCGTTTTACCAAAACCGTATTAACCCGACCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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