SE2020177

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5379
  • Medicago truncatula
  • SE2020177
  • Mutator
  • M67
  • MtChr7:26052454-26052674
  • AAAATAAAG
  • GCTAAATTACCTTTTTGGTCCTCTGACTATTTAATTGGTATCGGGTTAGTCTTAACTAAAAATTGATTTATTTCGGTCCTCTAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATAAAG   A          T                  A             A    --                                ------  GAAAGG    AA
         GCT AATTACCTTT TGGTCCTCTGACTATTTA TTGGTATCGGGTT GTCT  TAACTAAAAATTGATTTATTTCGGTCCTCTAA      CA      ACTA  
         ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||      ||      ||||   
         CGA TTAATGGAAA ACCAGGAGATTGATAAAT AACCATAGCCTAA CAGG  ATTGATTTTTAACTAAATAAAGCCAGGAGATT      GT      TGAT  
AATAAAATA   A          T                  C             C    AG                                CAAAAA  -GGCAA    GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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