SE2050178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5380
  • Medicago truncatula
  • SE2050178
  • PIF/harbinger
  • To3
  • MtChr7:14279481-14280014
  • TAA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAAAAAGGTTAAATATATTTTTA       C  TT    CCCTTTTGAAGAATACTCTCTATATTTCATTAAATCTTTTTGAAATCCTCAAATTTTATTTCCGTTATCAAAATTAGTCACTGGCGTTAATATTTTAGCGGAATGCTGATGTGGCAGTTAATGGGTCCCAATTATTTTAAGGTTAAATATATTTTTGGTCCCTACATTTTGCGTGACTTTAGAAAATAGTTCTTATATTTCAATAAATACTTTTAAAATTCCTAAAATAATAAG
                           TTTCTTA AT  TGCG                                                                                                                                                                                                                                          
                           ||||||| ||  ||||                                                                                                                                                                                                                                           
                           TAGGTTT GT  ACCT                                                                                                                                                                                                                                          
                  GTTTAATAA       -  -T    TAAGTGGGGTTTCATAAACTTAAAGGAGTTTTGTTATGTAAGGGAGTTTTGTAAGGAGGTAGGTTTGTGTGAGATTTACAAAAATTTTATGAGTGTAAAATAGAGACAATAGTTTTAATCAGAAACAACAATTAAGAGATTGCCTTACGACTACACCGTCAATCGCCCAGGGTTAATAAAATCCCAATTTATACAAAAACCAAAGATGTAAAACGCACTGAGACTTCTTATAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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