SE2010179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5381
  • Medicago truncatula
  • SE2010179
  • Tc1/Mariner
  • St18
  • MtChr7:4865480-4865754
  • TA
  • TACTCCCTCCGTTTTAAAATGAGTGTCGCTTTAGCCAATTGCACACAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
          -----------------------                       ----GC    T   -CAC     AAGGAATGAAATAAAGTAG    ATGTCATAA    -T     A    -AA    A   -     -GAAAAAG    ACTT
TACTCCCTCC                       GTTTTAAAATGAGTGTCGCTTTA      CAAT GCA    AAATT                   TCAA         CAAT  ATACT AAAT   CCTT CTT TATAA        ACAA    
||||||||||                       |||||||||||||||||||||||      |||| |||    |||||                   ||||         ||||  ||||| ||||   |||| ||| |||||        ||||     
ATGAGGGAGG                       CAAAATTTTACTTATAGCGAAAT      GTTA CGT    TTTAA                   AGTT         GTTA  TATGA TTTA   GGAG GAG GTGTT        TGTT    
          TATATCAGTTTTTTTTTTTTAAA                       GTAAAA    -   TAAA     ------------AAAAGAA    GAAATGGAA    TT     G    AAG    A   T     AAAAGTTA    AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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