SE2020184

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5386
  • Medicago truncatula
  • SE2020184
  • Mutator
  • M69
  • MtChr1:28909991-28910193
  • TAGAGATAG
  • GGAGTTCGGGTTTGCTCCATTTATCTACCCACCATTTATCGCCCATTTATGATAGAGATAGATGCAAATGATAAATTAGTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGAGATA              C              CA        - -GC    T     TAG            ATG             GTCC     TTA
        GGAGTTCGGGTTTG TCCATTTATCTACC  CCATTTAT C   CCAT TATGA   AGATAGATGCAA   ATAAATTAGTGGG    ACTTA   
        |||||||||||||| ||||||||||||||  |||||||| |   |||| |||||   ||||||||||||   |||||||||||||    |||||    
        TCTCAGGCCTAAAC AGGTAAATAGATGG  GGTAAATA G   GGTA ATATT   TTTATCTGTGTT   TATTTAATCACCC    TGAAT   
GATAGAGA              C              -A        A ACA    C     CTA            CAA             ----     TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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