Plant MITE

SE2020185

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5387
Medicago truncatula
SE2020185
Mutator
M2
MtChr1:8139910-8140092
ATTTCATAA
GAGGAGTGTTATTTGAACAACCAGACAACTT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCATAA        T          AC  ------        ATAGAACAAC    A      AAGAAAAGGTAGG     GCACAAAAATC
         GAGGAGTG TATTTGAACA  CA      GACAACTT          CATA TTTACA             TATCT           
         |||||||| ||||||||||  ||      ||||||||          |||| ||||||             |||||           A
         CTCTTTAC ATAAACTTGT  GT      CTGTTGAA          GTAT GAGTGT             ATAGA           
AATACTTTA        T          AA  AAAACA        ---AGAGAGA    -      AATCAAAAATGAA     GAGATAACGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020185

ATTTCATAAGAGGAGTGTTATTTGAACAACCAGACAACTTATAGAACAACCATAATTTACAAAGAAAAGGTAGGTATCTGCACAAAAATCAAAGCAATAGAGAGATAAAGTAAAAACTAATGTGAGTATGAGAGAGAAAGTTGTCACAAAATGAATGTTCAAATATCATTTCTCATTTCATAA

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