Plant MITE

SE2020186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5388
Medicago truncatula
SE2020186
Mutator
M25
MtChr2:27860569-27860756
AAAGCATAA
GCATAAGAGAAATGCTAGCAACACACATTTTAACACACTCTCTTTGGTTAAAATTCACATGGGACCCACCAAATT

Secondary structure and sequence

TSD TIR

5'

3'

 AAA  ATA  A   A                          --------------T     ----                  GA           TATA   G
    GC   AG GAA TGCTAGCAACACACATTTTAACACAC               CTCTT    TGGTTAAAATTCACATGG  CCCACCAAATT    TGG 
    ||   || ||| ||||||||||||||||||||||||||               |||||    ||||||||||||||||||  |||||||||||    ||| A
    CG   TC CTT ACGATCGTTGTGTGTAAAATTGTGTG               GAGAA    ACCAATTTTAAGTGTACC  GGGTGGTTTAG    ACC 
AATA  AAA  -   -                          TGAAAAGTTGTGTGT     ACTA                  -A           -TAC   C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020186

AAAGCATAAGAGAAATGCTAGCAACACACATTTTAACACACTCTCTTTGGTTAAAATTCACATGGGACCCACCAAATTTATATGGGACCCACATGATTTGGTGGGACCATGTGAATTTTAACCAATCAAAGAGTGTGTGTTGAAAAGTGTGTGTTAAAATGTGTGTTGCTAGCATTCCTAAAGCATAA

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