Plant MITE

SE2030190

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5392
Medicago truncatula
SE2030190
hAT
Hat12
AC202596:84062-84640
TAGGGGTG
TAGGGGTGTTC

Secondary structure and sequence

TSD TIR

5'

3'

           ----  G        -    ------  -  ---   CAA CATAATAATCATCCAAACCGCGAGAGAAAAAAACATGCGGTTTGGTTTGGTTCGGTTGATTTTTAAAAAGTCATCCAAACCAAACCAAACCAAACCAATGCGGTTTGGATTGGTTCAGTTGATGCGGTTAATCTCGAGATAAATAAAAAATTACATTAACTCTAATATTGCCAACTAATACCAAACAATTTTAATTATTACAAAAAAAAGAACTTGAAGTTCCAAAATAGCATTACAATACCAATAA
TAGGGGTGTTC    GC GTGCGGTT TGGT      TC GG   TTT   G                                                                                                                                                                                                                                                       
|||||||||||    || |||||||| ||||      || ||   |||   |                                                                                                                                                                                                                                                        
ATCCCCACAAG    GG CTTGGTTG GTTA      TG CG   GGC   T                                                                                                                                                                                                                                                       
           TTTT  -        G    TCTTTT  G  TTT   --- TGGTTGGGTTTGGCTTTGGCGTTTTTTGGCGTGAACCAAGCCTACTGAAAATCTGACTTGGCGCGCCAAGCCAAGCTAAACGACAAACGTAGAGTCGTTGGCTTGGTTTGGTTTGGTTTGGCGTTTTTATGAGTTACAATAATTTGATTCATAACGTGATCGGGTTATGGTTTCACTTGAGTTCGGGTTCGGGTTGTGATAGGTCGATAATAAAACCATGACATTACAATAAAATCTATTTATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030190

TAGGGGTGTTCGCGGTGCGGTTTGGTTCGGTTTCAAGCATAATAATCATCCAAACCGCGAGAGAAAAAAACATGCGGTTTGGTTTGGTTCGGTTGATTTTTAAAAAGTCATCCAAACCAAACCAAACCAAACCAATGCGGTTTGGATTGGTTCAGTTGATGCGGTTAATCTCGAGATAAATAAAAAATTACATTAACTCTAATATTGCCAACTAATACCAAACAATTTTAATTATTACAAAAAAAAGAACTTGAAGTTCCAAAATAGCATTACAATACCAATAAAAGTTATTTATCTAAAATAACATTACAGTACCAAAATAATAGCTGGATAGTGTTGGGCTTGGGCTTGAGTTCACTTTGGTATTGGGCTAGTGCAATACTTAGTTTAATAACATTGAGTATTTTTGCGGTTTGGTTTGGTTTGGTTCGGTTGCTGAGATGCAAACAGCAAATCGAACCGAACCGCGCGGTTCAGTCTAAAAGTCATCCGAACCAAGTGCGGTTTTTTGCGGTTTCGGTTTGGGTTGGTTCGGTTTGCGGTTTTTCTATTGGGTTGGTTCGGTTTTGAACACCCCTA

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