SE2020191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5393
  • Medicago truncatula
  • SE2020191
  • Mutator
  • M2
  • MtChr3:27315658-27315859
  • AATTTTTTA
  • GAGAAATGATATTTGAACAACCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTTTTA   AAA  A          A    --TTTTTAC                TTTTCTCTCATACTCACATTATCT      TTTTTCTCTCTAT  CTT    TTT
         GAG   TG TATTTGAACA CCAT         AATTTTTGTGACAACT                        TTTTAC             TG   TGGT   
         |||   || |||||||||| ||||         ||||||||||||||||                        ||||||             ||   ||||    
         CTC   AC ATAAACTTGT GGTA         TTGAAAACACTGTTGG                        AAAATG             AT   ACCG   
ATTTTTTAA   AAC  A          A    TATACACTA                --------------------TTTT      TTTACTTTACTCC  --C    TGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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