Plant MITE

SE2010195

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5397
Medicago truncatula
SE2010195
Tc1/Mariner
St6
MtChr2:4778719-4779017
TA
TACTCCCTCCGTCCCATAATAAGTGAG

Secondary structure and sequence

TSD TIR

5'

3'

    C        C   AA   G    CAATTTTCAAAAAACTATAGTCCGAA      -  TTCATTTCAATTTTCAATACAATATTAATACTTTTTTTTTTCAATTACAACTCTAATTTATACTACTTTTACCACTCTCAATTCAATATATTCTATTTTAC
TACT CCTCCGTC CAT  TAA TGAG                          AAAATT GA                                                                                                     
|||| |||||||| |||  ||| ||||                          |||||| ||                                                                                                      
ATGA GGAGGCAG GTA  ATT ACTC                          AGAAAA GA                                                                                                     
    A        A   AA   G    --------------------------      C  GTAAAATGCAAATAATTCTTTTTTCACATATTCATTTTCTCTCTCTTTTTACCAAAACTTACGGGAATAGTTCATAACCACGTAAGGAGAAATAGTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010195

TACTCCCTCCGTCCCATAATAAGTGAGCAATTTTCAAAAAACTATAGTCCGAAAAAATTGATTCATTTCAATTTTCAATACAATATTAATACTTTTTTTTTTCAATTACAACTCTAATTTATACTACTTTTACCACTCTCAATTCAATATATTCTATTTTACATTTATGATAAAGAGGAATGCACCAATACTTGATAAGGGCATTCAAAACCATTTTTCTCTCTCTTTTACTTATACACTTTTTTCTTAATAAACGTAAAATGAGCAAAAGACTCAGTTAAAATGAGACGGAGGAAGTA

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