Plant MITE

SE2010200

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5402
Medicago truncatula
SE2010200
Tc1/Mariner
St11
MtChr8:35105948-35106210
TA
TACTCCCTCCGTTTCGAAATACATGTCCAA

Secondary structure and sequence

TSD TIR

5'

3'

    C                C        -TTTT    ATGTGCGCTATTCACTTGACTTACTTTGACCATACTTTTTAACTAATATATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTATCTC
TACT CCTCCGTTTCGAAATA ATGTCCAA     TGCA                                                                                             
|||| |||||||||||||||| ||||||||     ||||                                                                                              
ATGA GGAGGCAAAGTTTTAT TACAGGTT     AGTG                                                                                             
    A                C        CAGTT    AAGTGTATACAGTTACGTGTTAAAATTGGCAATTATATAAATTAATAGATTTCATTTTTTAATATTTTTAAATTATAAAACTTTTATAAACAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010200

TACTCCCTCCGTTTCGAAATACATGTCCAATTTTTGCAATGTGCGCTATTCACTTGACTTACTTTGACCATACTTTTTAACTAATATATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTATCTCGACAAATATTTTCAAAATATTAAATTTTTATAATTTTTTACTTTAGATAATTAAATATATTAACGGTTAAAATTGTGCATTGACATATGTGAAGTGATTGACTTGGACATCTATTTTGAAACGGAGGAAGTA

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