SE2020204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5406
  • Medicago truncatula
  • SE2020204
  • Mutator
  • M19
  • MtChr4:12000447-12000972
  • ATTTTAAAG
  • AGGGTTAAATATGTTTTTGGTCCGTATAAATATACAAAATTTTCATTTTAGTCCCTCTAAAAAATTTCTTCAACTTTTAGTCCCCAAAAGTTTTCCTTCTTCACTTTTGGTCCTTCCTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTAA                      CG          -   AA     A           C       --T                   -CA         CT  T               CC     TATA       A     A    A       C  CA     -TTTTA    A  T  T      A       CTCGC    -AATAATTAATT         G          C               TAA  T
       AGGGTTAAATATGTTTTTGGTC  TATAAATATA CAA  TTTTC TTTTAGTCCCT TAAAAAA   TTCTTCAACTTTTAGTCCC   AAAGTTTTC  TC TCACTTTTGGTCCTT  TTTTA    AACTCAT TGTAG ATTT TATTTTT AA  AAATT      AAAT GT TA AATATT TAAGAAT     CCAA            TTTTTTAAC AAACATGAAT AAATATGAATTTTTA   GT 
       ||||||||||||||||||||||  |||||||||| |||  ||||| ||||||||||| |||||||   |||||||||||||||||||   |||||||||  || |||||||||||||||  |||||    ||||||| ||||| |||| ||||||| ||  |||||      |||| || || |||||| |||||||     ||||            ||||||||| |||||||||| |||||||||||||||   || T
       TCCCAATTTATACAAAAACCAG  ATATTTATAT GTT  AAAAG AAAATCAGGGA ATTTTTT   AAGAAGTTGAAAATCAGGG   TTTTAAAAG  AG GGTGAAAACCAGGGA  AAAAT    TTGAGTA ACATC TAAA ATAAAAA TT  TTTAA      TTTA CA AT TTATAA ATTTTTA     GGTT            AAAAAATTG TTTGTACTTA TTTATACTTAAAAAT   CG 
AATTTTA                      AA          A   -G     C           C       TTT                   ATA         TT  T               TA     TCAG       C     G    A       A  AC     CACGTA    -  C  C      C       -AACA    AAAAAAAAGCTT         A          A               TGA  G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End