SE2020205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5407
  • Medicago truncatula
  • SE2020205
  • Mutator
  • M15
  • MtChr2:9598292-9598745
  • TAAATTCAT
  • GGCTTAAATATGTATTTCATCCTTGCAATTAAGGGTCGTTTAAAAATTGGTTTCTGTATTCGCTAATCCTTGCAAATTAGCCTTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
       TAAATTCAT       A                       A    -                 C    T   C       T    A   G       ATCG               G         GA  A                                              CA                           AGAAGAG  CAAAATATT
                GGCTTAA TATGTATTTCATCCTTGCAATTA GGGT CGTTTAAAAATTGGTTT TGTA TCG TAATCCT GCAA TTA CCTTGCA    TTAATCATTTAAAAT TCGTCCTTT  CC ACTTAATCACTGCCACGTCACTAATTTGATGACGTGGCAATCACTG  ACACATGAAATTCCAATTTTGCCCTTA       GA         
                ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||| ||||||| |||| ||| |||||||    ||||||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||       ||         G
                CTGAATT ATACATAAAGTAGGAACGTTAAT CCCA GCAAATTTTTAACCAGG ATAT AGT ATTAGGA CGTT AAT GGAACGT    AATTAGTAAATTTTA AGTAGGGAG  GG TGAATTAGTGATGGTGCAGTGATTAAACTACTGCACCGTTAGTGAC  TGTGTATTTTAAGGTTAAAATGGGGAT       CT         
ATTTATTTACTTAAAT       C                       -    A                 A    T   A       C    A   G       AACA               A         AG  G                                              AG                           CCAAAGG  AAGAAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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